Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02317.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3131
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32


Found at i:1225 original size:23 final size:23

Alignment explanation


    Indices: 1180--1225  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1170 TAGAAAGTTG

                        *  * **    
       1180 AAAGAGTGTAATGTTTTGTCATA
          1 AAAGAGTGTAATCTTATAACATA

                                   
       1203 AAAGAGTGTAATCTTATAACATA
          1 AAAGAGTGTAATCTTATAACATA

       1226 GGTTGGAAAC


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.41, C:0.07, G:0.17, T:0.35


Consensus pattern (23 bp):   
AAAGAGTGTAATCTTATAACATA
Done.