Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02318.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3427
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34


Found at i:3015 original size:27 final size:27

Alignment explanation


    Indices: 2977--3030  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2967 TTTGTTCTAG

                                       
       2977 CAGGCATTGAAGAATCTCAATCTTATT
          1 CAGGCATTGAAGAATCTCAATCTTATT

                                       
       3004 CAGGCATTGAAGAATCTCAATCTTATT
          1 CAGGCATTGAAGAATCTCAATCTTATT

       3031 GAATGGAACA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33


Consensus pattern (27 bp):   
CAGGCATTGAAGAATCTCAATCTTATT
Done.