Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02320.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2923
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29


Found at i:1805 original size:18 final size:17

Alignment explanation


    Indices: 1750--1806  Score: 51
    Period size: 18  Copynumber: 3.2  Consensus size: 17

       1740 TGGAGGTTTG

                              
       1750 ATGCCTGGGATGCCTGGA
          1 ATGCCT-GGATGCCTGGA

                 *   **  *    
       1768 ATGCCAGGAACCCGGAGA
          1 ATGCCTGGATGCCTG-GA

                              
       1786 ATGCCTGGTATGCCTGGA
          1 ATGCCTGG-ATGCCTGGA

               
       1804 ATG
          1 ATG

       1807 GACAGTGATA


Statistics
Matches: 29,  Mismatches: 8, Indels: 4
        0.71            0.20        0.10

Matches are distributed among these distances:
  17    6  0.21
  18   19  0.66
  19    4  0.14

ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19


Consensus pattern (17 bp):   
ATGCCTGGATGCCTGGA
Done.