Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02324.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1775
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25


Found at i:405 original size:6 final size:6

Alignment explanation


    Indices: 394--418  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        384 TCGGCCGACA

                                         
        394 CCTCCG CCTCCG CCTCCG CCTCCG C
          1 CCTCCG CCTCCG CCTCCG CCTCCG C

        419 TTCCTCCGAG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.68, G:0.16, T:0.16


Consensus pattern (6 bp):   
CCTCCG

Found at i:806 original size:11 final size:12

Alignment explanation


    Indices: 779--811  Score: 50
    Period size: 11  Copynumber: 2.8  Consensus size: 12

        769 GGAAGGAGTG

                        
        779 GAGGTAGAGGAA
          1 GAGGTAGAGGAA

                      * 
        791 GAGGTAG-GGTA
          1 GAGGTAGAGGAA

                      
        802 GAGGTAGAGG
          1 GAGGTAGAGG

        812 TGCGCGAATG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  11   10  0.53
  12    9  0.47

ACGTcount: A:0.33, C:0.00, G:0.55, T:0.12


Consensus pattern (12 bp):   
GAGGTAGAGGAA

Found at i:807 original size:6 final size:6

Alignment explanation


    Indices: 779--812  Score: 52
    Period size: 6  Copynumber: 5.8  Consensus size: 6

        769 GGAAGGAGTG

                       *                            
        779 GAGGTA GAGGAA GAGGTA G-GGTA GAGGTA GAGGT
          1 GAGGTA GAGGTA GAGGTA GAGGTA GAGGTA GAGGT

        813 GCGCGAATGG


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
   5    5  0.20
   6   20  0.80

ACGTcount: A:0.32, C:0.00, G:0.53, T:0.15


Consensus pattern (6 bp):   
GAGGTA
Done.