Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02324.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.25


Found at i:242 original size:11 final size:12

Alignment explanation


    Indices: 215--247  Score: 50
    Period size: 11  Copynumber: 2.8  Consensus size: 12

        205 GGAAGGAGTG

                        
        215 GAGGTAGAGGAA
          1 GAGGTAGAGGAA

                      * 
        227 GAGGTAG-GGTA
          1 GAGGTAGAGGAA

                      
        238 GAGGTAGAGG
          1 GAGGTAGAGG

        248 TGCGCGAATG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  11   10  0.53
  12    9  0.47

ACGTcount: A:0.33, C:0.00, G:0.55, T:0.12


Consensus pattern (12 bp):   
GAGGTAGAGGAA

Found at i:243 original size:6 final size:6

Alignment explanation


    Indices: 215--248  Score: 52
    Period size: 6  Copynumber: 5.8  Consensus size: 6

        205 GGAAGGAGTG

                       *                            
        215 GAGGTA GAGGAA GAGGTA G-GGTA GAGGTA GAGGT
          1 GAGGTA GAGGTA GAGGTA GAGGTA GAGGTA GAGGT

        249 GCGCGAATGG


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
   5    5  0.20
   6   20  0.80

ACGTcount: A:0.32, C:0.00, G:0.53, T:0.15


Consensus pattern (6 bp):   
GAGGTA
Done.