Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02333.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1185
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:977 original size:13 final size:14

Alignment explanation


    Indices: 952--980  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

        942 AAAGGGGAAT

                          
        952 GAAGAACAAAATGG
          1 GAAGAACAAAATGG

                          
        966 GAAGAA-AAAATGG
          1 GAAGAACAAAATGG

              
        979 GA
          1 GA

        981 GTGAAGGATA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    9  0.60
  14    6  0.40

ACGTcount: A:0.59, C:0.03, G:0.31, T:0.07


Consensus pattern (14 bp):   
GAAGAACAAAATGG
Done.