Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02339.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4624
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:73 original size:20 final size:20

Alignment explanation


    Indices: 45--82  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

         35 TATCTCATCT

                *                
         45 AACACCAAA-AAAGAAATTCA
          1 AACAACAAAGAAA-AAATTCA

                              
         65 AACAACAAAGAAAAAATT
          1 AACAACAAAGAAAAAATT

         83 TAAATAAAAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  20   13  0.81
  21    3  0.19

ACGTcount: A:0.68, C:0.16, G:0.05, T:0.11


Consensus pattern (20 bp):   
AACAACAAAGAAAAAATTCA
Done.