Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02343.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2921
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:2081 original size:6 final size:6

Alignment explanation


    Indices: 2070--2103  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

       2060 TCTGTCATTA

                                                   
       2070 ATGACC ATGACC ATGACC ATGACC ATGACC ATGA
          1 ATGACC ATGACC ATGACC ATGACC ATGACC ATGA

       2104 AAATGACACA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.35, C:0.29, G:0.18, T:0.18


Consensus pattern (6 bp):   
ATGACC

Found at i:2109 original size:12 final size:12

Alignment explanation


    Indices: 2069--2110  Score: 57
    Period size: 12  Copynumber: 3.5  Consensus size: 12

       2059 TTCTGTCATT

                        
       2069 AATGACCATGAC
          1 AATGACCATGAC

            *           
       2081 CATGACCATGAC
          1 AATGACCATGAC

            *          *
       2093 CATGACCATGAA
          1 AATGACCATGAC

                  
       2105 AATGAC
          1 AATGAC

       2111 ACAGAAAAAA


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   27  1.00

ACGTcount: A:0.40, C:0.26, G:0.17, T:0.17


Consensus pattern (12 bp):   
AATGACCATGAC

Found at i:2109 original size:18 final size:18

Alignment explanation


    Indices: 2069--2110  Score: 66
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       2059 TTCTGTCATT

                             *
       2069 AATGACCATGACCATGAC
          1 AATGACCATGACCATGAA

            *                 
       2087 CATGACCATGACCATGAA
          1 AATGACCATGACCATGAA

                  
       2105 AATGAC
          1 AATGAC

       2111 ACAGAAAAAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.40, C:0.26, G:0.17, T:0.17


Consensus pattern (18 bp):   
AATGACCATGACCATGAA
Done.