Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02348.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3938
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32


Found at i:178 original size:6 final size:6

Alignment explanation


    Indices: 167--192  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        157 ACCATCCTCT

                                          
        167 TCTTCA TCTTCA TCTTCA TCTTCA TC
          1 TCTTCA TCTTCA TCTTCA TCTTCA TC

        193 GCTGTTATCG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.15, C:0.35, G:0.00, T:0.50


Consensus pattern (6 bp):   
TCTTCA

Found at i:3492 original size:18 final size:19

Alignment explanation


    Indices: 3460--3498  Score: 71
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       3450 TACACCTTCT

                               
       3460 TTACTAATAATTTTTTTAA
          1 TTACTAATAATTTTTTTAA

                               
       3479 TTACTAAT-ATTTTTTTAA
          1 TTACTAATAATTTTTTTAA

              
       3497 TT
          1 TT

       3499 TTAAAATAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  18   12  0.60
  19    8  0.40

ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62


Consensus pattern (19 bp):   
TTACTAATAATTTTTTTAA

Found at i:3903 original size:22 final size:21

Alignment explanation


    Indices: 3869--3909  Score: 64
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       3859 AAAATAAAAA

                         *       
       3869 TAAAAATAATTTTCAAATTTT
          1 TAAAAATAATTTTAAAATTTT

                                
       3890 TAAAAATAATTTTTAAAATT
          1 TAAAAATAA-TTTTAAAATT

       3910 CAAAATATTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21    9  0.50
  22    9  0.50

ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46


Consensus pattern (21 bp):   
TAAAAATAATTTTAAAATTTT
Done.