Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02359.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1884
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27


Found at i:34 original size:6 final size:6

Alignment explanation


    Indices: 15--47  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

          5 AAGCAAATCA

                      *                           
         15 TCTTCC TCTCCC TCTTCC TCTTCC TCTTCC TCT
          1 TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCT

         48 AGAAGGGGAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (6 bp):   
TCTTCC
Done.