Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00911.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3178
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:3178 original size:47 final size:45

Alignment explanation


    Indices: 3058--3178  Score: 147
    Period size: 46  Copynumber: 2.6  Consensus size: 45

       3048 TAGGATGGTT

                                                 *        
       3058 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
          1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGC

                *                              *            
       3104 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAAC
          1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATG---C

            *                            
       3150 TAGGCATCCGAACTCGTTGAGTTGAGTCC
          1 GA-GCATCCGAACTCGTTGAGTTGAGTCC


Statistics
Matches: 66,  Mismatches: 5, Indels: 7
        0.85            0.06        0.09

Matches are distributed among these distances:
  43    4  0.06
  45    2  0.03
  46   35  0.53
  47   25  0.38

ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27


Consensus pattern (45 bp):   
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGC
Done.