Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00913.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 291

Length: 485
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29


Found at i:98 original size:39 final size:39

Alignment explanation


    Indices: 44--196  Score: 252
    Period size: 39  Copynumber: 3.9  Consensus size: 39

         34 GAATGTTCGA

                                                *  
         44 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
          1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT

                                                 * 
         83 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
          1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT

            *                                      
        122 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
          1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT

                        *               *       
        161 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
          1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG

        197 GGTTACCATA


Statistics
Matches: 106,  Mismatches: 7, Indels: 1
        0.93            0.06        0.01

Matches are distributed among these distances:
  39   89  0.84
  40   17  0.16

ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24


Consensus pattern (39 bp):   
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT

Found at i:212 original size:40 final size:39

Alignment explanation


    Indices: 45--226  Score: 247
    Period size: 39  Copynumber: 4.6  Consensus size: 39

         35 AATGTTCGAG

                                               *  *
         45 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
          1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA

                                                *  
         84 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
          1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA

                                                  *
        123 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
          1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA

                       *               *       *    
        162 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
          1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA

            **   *        *          
        202 CCATAACCGGGCTATGTCCCGAAGG
          1 TGATATCCGGGCTAAG-CCCGAAGG

        227 TGTTTTGAAC


Statistics
Matches: 128,  Mismatches: 14, Indels: 1
        0.90            0.10        0.01

Matches are distributed among these distances:
  39   88  0.69
  40   40  0.31

ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23


Consensus pattern (39 bp):   
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Done.