Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02383.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1748
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:440 original size:10 final size:10

Alignment explanation


    Indices: 416--446  Score: 55
    Period size: 10  Copynumber: 3.2  Consensus size: 10

        406 CAATAAAAAA

                      
        416 ATATTTTTAT
          1 ATATTTTTAT

                      
        426 A-ATTTTTAT
          1 ATATTTTTAT

                      
        435 ATATTTTTAT
          1 ATATTTTTAT

              
        445 AT
          1 AT

        447 TAAGATACTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
   9    9  0.45
  10   11  0.55

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (10 bp):   
ATATTTTTAT

Found at i:747 original size:15 final size:15

Alignment explanation


    Indices: 727--756  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        717 GTATTTCTTC

                           
        727 TCTACAAAACATTCA
          1 TCTACAAAACATTCA

                      *    
        742 TCTACAAAACTTTCA
          1 TCTACAAAACATTCA

        757 GCATCATCAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.27, G:0.00, T:0.30


Consensus pattern (15 bp):   
TCTACAAAACATTCA
Done.