Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00919.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 482

Length: 804
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:733 original size:17 final size:17

Alignment explanation


    Indices: 699--733  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        689 CAGCAGCTTG

                         *   
        699 TTTTTATTTTATTTTAT
          1 TTTTTATTTTATTATAT

                      *      
        716 TTTTTATTTTCTTATAT
          1 TTTTTATTTTATTATAT

             
        733 T
          1 T

        734 GGTCTTATGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80


Consensus pattern (17 bp):   
TTTTTATTTTATTATAT
Done.