Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02425.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2180
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29


Found at i:1351 original size:30 final size:30

Alignment explanation


    Indices: 1315--1374  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1305 TTCATCACAG

                                          
       1315 TTTGTCCACTGGTTCTCCCATTCCTTCGCC
          1 TTTGTCCACTGGTTCTCCCATTCCTTCGCC

                                          
       1345 TTTGTCCACTGGTTCTCCCATTCCTTCGCC
          1 TTTGTCCACTGGTTCTCCCATTCCTTCGCC

       1375 GACTGTTTCC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.07, C:0.40, G:0.13, T:0.40


Consensus pattern (30 bp):   
TTTGTCCACTGGTTCTCCCATTCCTTCGCC

Done.