Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02436.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5057
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Found at i:574 original size:34 final size:34

Alignment explanation


    Indices: 531--596  Score: 123
    Period size: 34  Copynumber: 1.9  Consensus size: 34

        521 ACTGTAAGAA

                                              
        531 AAAGAACAATGGTAACTTGAATTTTACTACAAGT
          1 AAAGAACAATGGTAACTTGAATTTTACTACAAGT

                          *                 
        565 AAAGAACAATGGTAGCTTGAATTTTACTACAA
          1 AAAGAACAATGGTAACTTGAATTTTACTACAA

        597 TTTTGCCATA


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   31  1.00

ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29


Consensus pattern (34 bp):   
AAAGAACAATGGTAACTTGAATTTTACTACAAGT
Done.