Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02438.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2098
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26


Found at i:1808 original size:4 final size:4

Alignment explanation


    Indices: 1799--1831  Score: 57
    Period size: 4  Copynumber: 8.2  Consensus size: 4

       1789 AAACAAGATA

                                       *             
       1799 GCAT GCAT GCAT GCAT GCAT GCGT GCAT GCAT G
          1 GCAT GCAT GCAT GCAT GCAT GCAT GCAT GCAT G

       1832 TAAATCATAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   4   27  1.00

ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24


Consensus pattern (4 bp):   
GCAT

Done.