Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02444.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 708

Length: 1181
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:1137 original size:22 final size:22

Alignment explanation


    Indices: 1109--1153  Score: 81
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1099 TGATTCGCGG

                    *             
       1109 AGTGCCTCTTGTGTAATAAAAA
          1 AGTGCCTCGTGTGTAATAAAAA

                                  
       1131 AGTGCCTCGTGTGTAATAAAAA
          1 AGTGCCTCGTGTGTAATAAAAA

             
       1153 A
          1 A

       1154 CCCTTGGCTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29


Consensus pattern (22 bp):   
AGTGCCTCGTGTGTAATAAAAA

Done.