Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02456.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2431
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33


Found at i:968 original size:46 final size:46

Alignment explanation


    Indices: 916--1089  Score: 185
    Period size: 46  Copynumber: 3.8  Consensus size: 46

        906 GTTGAGCATC

                                                          
        916 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
          1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT

             *                          * *        *           
        962 CAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATT
          1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TT

               *          *      *                      **
       1009 CGAGCTCGTTGAGTAGAGTCCAAGTTCACTTATGGATGCGAATGCC
          1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT

               *                               
       1055 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
          1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG

       1090 GCGGGTTACA


Statistics
Matches: 104,  Mismatches: 15, Indels: 18
        0.76            0.11        0.13

Matches are distributed among these distances:
  42    2  0.02
  43    5  0.05
  45    3  0.03
  46   59  0.57
  47   25  0.24
  48    3  0.03
  50    5  0.05
  51    2  0.02

ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30


Consensus pattern (46 bp):   
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT

Found at i:1079 original size:93 final size:93

Alignment explanation


    Indices: 911--1081  Score: 270
    Period size: 93  Copynumber: 1.8  Consensus size: 93

        901 GGATGGTTGA

                               *      *                      **              
        911 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCAAACTCGTTGAGT
          1 GCATCCGAACTCGTTGAGTAGAGTCCAAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGT

                                        
        976 TGAGTCCGAGTTCGTGAGATGTAACTAG
         66 TGAGTCCGAGTTCGTGAGATGTAACTAG

                *   *                                           * *          
       1004 GCATTCGAGCTCGTTGAGTAGAGTCCAAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
          1 GCATCCGAACTCGTTGAGTAGAGTCCAAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGT

                         
       1069 TGAGTCCGAGTTC
         66 TGAGTCCGAGTTC

       1082 ACTTATGGGC


Statistics
Matches: 70,  Mismatches: 8, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  93   70  1.00

ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29


Consensus pattern (93 bp):   
GCATCCGAACTCGTTGAGTAGAGTCCAAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.