Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02474.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1453
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33


Found at i:1312 original size:34 final size:34

Alignment explanation


    Indices: 1266--1334  Score: 111
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       1256 ACCAGTCTTA

                                              
       1266 GTTTGTAAAATTTAGTCTTTTGAGGGGCTACTTC
          1 GTTTGTAAAATTTAGTCTTTTGAGGGGCTACTTC

                   *     *         *          
       1300 GTTTGTACAATTTTGTCTTTTGATGGGCTACTTC
          1 GTTTGTAAAATTTAGTCTTTTGAGGGGCTACTTC

             
       1334 G
          1 G

       1335 ATGTTCATGG


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  34   32  1.00

ACGTcount: A:0.17, C:0.13, G:0.23, T:0.46


Consensus pattern (34 bp):   
GTTTGTAAAATTTAGTCTTTTGAGGGGCTACTTC
Done.