Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02476.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3734
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:2521 original size:33 final size:32

Alignment explanation


    Indices: 2416--2533  Score: 114
    Period size: 33  Copynumber: 3.7  Consensus size: 32

       2406 CGGTTAGTAC

                        *         *          
       2416 GGATGATGCTCCTTTAAGCAGGACAAGTAGCAG
          1 GGATGATGC-CCCTTAAGCAGGCCAAGTAGCAG

                     *  *     *   *  *   *  
       2449 GGATG-TG-TCCATAAGCCGGCTAATTAGTAG
          1 GGATGATGCCCCTTAAGCAGGCCAAGTAGCAG

                                             
       2479 GGATGATGCCCCTTCAAGCAGGCCAAGTAGCAG
          1 GGATGATGCCCCTT-AAGCAGGCCAAGTAGCAG

                             *    
       2512 GGATGATGCCCCTATAATCAGG
          1 GGATGATGCCCCT-TAAGCAGG

       2534 TTGGGTACTG


Statistics
Matches: 66,  Mismatches: 15, Indels: 8
        0.74            0.17        0.09

Matches are distributed among these distances:
  30   20  0.30
  31    2  0.03
  32    5  0.08
  33   38  0.58
  34    1  0.02

ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21


Consensus pattern (32 bp):   
GGATGATGCCCCTTAAGCAGGCCAAGTAGCAG
Done.