Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02479.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4419
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:3740 original size:57 final size:57

Alignment explanation


    Indices: 3671--3788  Score: 236
    Period size: 57  Copynumber: 2.1  Consensus size: 57

       3661 TCACTTTAAA

                                                                     
       3671 CAGATTTTGAGCCAGAGCCAGAGTCTGACATTAAGGATTTAGAGGAGGAAGACTTGT
          1 CAGATTTTGAGCCAGAGCCAGAGTCTGACATTAAGGATTTAGAGGAGGAAGACTTGT

                                                                     
       3728 CAGATTTTGAGCCAGAGCCAGAGTCTGACATTAAGGATTTAGAGGAGGAAGACTTGT
          1 CAGATTTTGAGCCAGAGCCAGAGTCTGACATTAAGGATTTAGAGGAGGAAGACTTGT

                
       3785 CAGA
          1 CAGA

       3789 GGATGATTTG


Statistics
Matches: 61,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  57   61  1.00

ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24


Consensus pattern (57 bp):   
CAGATTTTGAGCCAGAGCCAGAGTCTGACATTAAGGATTTAGAGGAGGAAGACTTGT
Done.