Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02478.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1062
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26


Found at i:693 original size:57 final size:57

Alignment explanation


    Indices: 620--736  Score: 234
    Period size: 57  Copynumber: 2.1  Consensus size: 57

        610 GGTACAATGA

                                                                     
        620 AGATTTTGAGCCAGAGCCAGAGTCTGACATTAAGGATTTAGAGGAGGAAGACTTGTC
          1 AGATTTTGAGCCAGAGCCAGAGTCTGACATTAAGGATTTAGAGGAGGAAGACTTGTC

                                                                     
        677 AGATTTTGAGCCAGAGCCAGAGTCTGACATTAAGGATTTAGAGGAGGAAGACTTGTC
          1 AGATTTTGAGCCAGAGCCAGAGTCTGACATTAAGGATTTAGAGGAGGAAGACTTGTC

               
        734 AGA
          1 AGA

        737 GGATGATTTG


Statistics
Matches: 60,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  57   60  1.00

ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24


Consensus pattern (57 bp):   
AGATTTTGAGCCAGAGCCAGAGTCTGACATTAAGGATTTAGAGGAGGAAGACTTGTC
Done.