Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02484.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1201
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30


Found at i:492 original size:25 final size:25

Alignment explanation


    Indices: 464--513  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        454 TTATCCCCTT

                                     
        464 AAATGATATCCATTAAAAGCAGGAG
          1 AAATGATATCCATTAAAAGCAGGAG

                                     
        489 AAATGATATCCATTAAAAGCAGGAG
          1 AAATGATATCCATTAAAAGCAGGAG

        514 CTTGTTCAAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.48, C:0.12, G:0.20, T:0.20


Consensus pattern (25 bp):   
AAATGATATCCATTAAAAGCAGGAG
Done.