Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02504.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2008
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:1674 original size:12 final size:12

Alignment explanation


    Indices: 1657--1686  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       1647 GAGGTCAAAA

                        
       1657 GATGATTACGAT
          1 GATGATTACGAT

                   *    
       1669 GATGATTCCGAT
          1 GATGATTACGAT

                  
       1681 GATGAT
          1 GATGAT

       1687 AAATTCAACG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33


Consensus pattern (12 bp):   
GATGATTACGAT
Done.