Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02510.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2497
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32


Found at i:120 original size:20 final size:21

Alignment explanation


    Indices: 95--139  Score: 74
    Period size: 20  Copynumber: 2.2  Consensus size: 21

         85 TATCGTATGA

                      *          
         95 AATTTTTTAAGAT-TTTAAAT
          1 AATTTTTTAAAATATTTAAAT

                                 
        115 AATTTTTTAAAATATTTAAAT
          1 AATTTTTTAAAATATTTAAAT

                
        136 AATT
          1 AATT

        140 ATATATTACA


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  20   12  0.52
  21   11  0.48

ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53


Consensus pattern (21 bp):   
AATTTTTTAAAATATTTAAAT

Done.