Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02513.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1833
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30


Found at i:19 original size:10 final size:10

Alignment explanation


    Indices: 5--29  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

          1 TTAA

                      
          5 AAAAATAAAT
          1 AAAAATAAAT

                      
         15 AAAAATAAAT
          1 AAAAATAAAT

                 
         25 AAAAA
          1 AAAAA

         30 GAAAATCGTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16


Consensus pattern (10 bp):   
AAAAATAAAT

Found at i:1088 original size:42 final size:42

Alignment explanation


    Indices: 1025--1309  Score: 252
    Period size: 42  Copynumber: 6.8  Consensus size: 42

       1015 TATCGTTACT

                *     *     *            *       *    
       1025 GTTCCTACTCACCTGAAGATCGATACTATCGAAGGCGTGATC
          1 GTTCTTACTCTCCTGATGATCGATACTATAGAAGGCGGGATC

             *  *     *   *       *  *   * *  *       
       1067 GGTCCTACTCACCTTATGATCGTTATTATCGTAGACGGGA-C
          1 GTTCTTACTCTCCTGATGATCGATACTATAGAAGGCGGGATC

                          *      *                *    *
       1108 TGTTCTTACTCTCCCGATGATAGATACTATAGAAGGCGTGATAG
          1 -GTTCTTACTCTCCTGATGATCGATACTATAGAAGGCGGGAT-C

                                  *   *     *  *       
       1152 GTT-TTACTCTCCTGATGATCGTTACCACT-GCAGACGGGATC
          1 GTTCTTACTCTCCTGATGATCGATACTA-TAGAAGGCGGGATC

                            *  *                    * 
       1193 GTTCTTACTCTCCTGAGGACCGATACTATAGAAGGCGGGACC
          1 GTTCTTACTCTCCTGATGATCGATACTATAGAAGGCGGGATC

                            *      *                * 
       1235 GTTCTTACTCTCCTGAGGATCGACACTATAGAAGGCGGGAAC
          1 GTTCTTACTCTCCTGATGATCGATACTATAGAAGGCGGGATC

                      *           *          
       1277 GTTCTTACTCACCTGATGATCGGTACTATAGAA
          1 GTTCTTACTCTCCTGATGATCGATACTATAGAA

       1310 TTTCACGTGA


Statistics
Matches: 194,  Mismatches: 43, Indels: 12
        0.78            0.17        0.05

Matches are distributed among these distances:
  41    5  0.03
  42  185  0.95
  43    4  0.02

ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29


Consensus pattern (42 bp):   
GTTCTTACTCTCCTGATGATCGATACTATAGAAGGCGGGATC

Done.