Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02536.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1746
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27


Found at i:1189 original size:18 final size:18

Alignment explanation


    Indices: 1142--1192  Score: 66
    Period size: 18  Copynumber: 2.8  Consensus size: 18

       1132 GGTCCGACAT

                    *  *      
       1142 CAGCTCCAACGACGGCCA
          1 CAGCTCCATCGGCGGCCA

                              
       1160 CAGCTCCATCGGCGGCCA
          1 CAGCTCCATCGGCGGCCA

             *     *       
       1178 CGGCTCCGTCGGCGG
          1 CAGCTCCATCGGCGG

       1193 GAAAGGCGCC


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   29  1.00

ACGTcount: A:0.16, C:0.43, G:0.31, T:0.10


Consensus pattern (18 bp):   
CAGCTCCATCGGCGGCCA
Done.