Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02568.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3661
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:2386 original size:213 final size:204

Alignment explanation


    Indices: 2006--2576  Score: 605
    Period size: 213  Copynumber: 2.7  Consensus size: 204

       1996 CATTTTTGTG

                *       *                 *                         * *   *  
       2006 GATACGAGGACAAACCTCCAAAGATG---CAAATGCATAGAAAACCTTTAAAAAAAGTTATCTAT
          1 GATATGAGGACATACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTTAAAAAAAATGATCCAT

                           *                           *                 *   
       2068 ATCTGTGTCTGACACACACACTTGAGTCTGAGTCAGAGGTTCACGAACCACCAATTA-TGTTATT
         66 ATCTGTGTCTGACACTCACACTTGAGTC-----C-GAGGTTCATGAACCACCAATTAGTGTAATT

                       *      **              *                              
       2132 GTATATTGTATATT-GTTGTTCATTACTCATTGTTCATGTTGCTCCAACTTTTCATTTTTCTGGA
        125 -T-TATTGT-TGTTCGTTACTCATTACTCATTGTCCATGTTGCTCCAACTTTTCATTTTTCTGGA

                   *              *
       2196 TATACCTGTGTTTTTAACAAATG
        187 TATACCTATG---TTAA-AAA-C

                     * *                                                     
       2219 GATATGAGGCCGTACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTTAAAGAAAAATGATCCA
          1 GATATGAGGACATACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTTAAA-AAAAATGATCCA

                 *   *                                                       
       2284 TATCTATGTTTGACACTCACACTTGAGTCCGAGGTTCATGAACCACCAATTAGTGTAATTTTATT
         65 TATCTGTGTCTGACACTCACACTTGAGTCCGAGGTTCATGAACCACCAATTAGTGTAATTTTATT

                     *           *                  *              *         
       2349 GTTGTTCGTAACTCATTGATTGTCATTGTCCATGTTGCTCTAACTTTTCATTTTTGTGGATATAC
        130 GTTGTTCGTTACTCATT-A--CTCATTGTCCATGTTGCTCCAACTTTTCATTTTTCTGGATATAC

                   *  *  
       2414 CTATGTTGAATAC
        192 CTATGTTAAAAAC

                                                            *                
       2427 GATATGAGGACATACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTAAAAAAGAATATGATCT
          1 GATATGAGGACATACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTTAAAAA-AA-ATGATC-

                                      *  *     *                           * 
       2492 C-TATCTGTGTCTGACACTCACGTGAGTCCGAGTCAGAGGTTCATGAACCACCAATTAGTGTATT
         63 CATATCTGTGTCTGACACTCAC---ACT-TGAGTCCGAGGTTCATGAACCACCAATTAGTGTAAT

                                 
       2556 TTTATTGTTGTTCGTTACTCA
        124 TTTATTGTTGTTCGTTACTCA

       2577 CTGTTCATGT


Statistics
Matches: 307,  Mismatches: 35, Indels: 32
        0.82            0.09        0.09

Matches are distributed among these distances:
 207    2  0.01
 208   51  0.17
 209   29  0.09
 210   17  0.06
 211   23  0.07
 212    9  0.03
 213  119  0.39
 216   22  0.07
 217   35  0.11

ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Consensus pattern (204 bp):   
GATATGAGGACATACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTTAAAAAAAATGATCCAT
ATCTGTGTCTGACACTCACACTTGAGTCCGAGGTTCATGAACCACCAATTAGTGTAATTTTATTG
TTGTTCGTTACTCATTACTCATTGTCCATGTTGCTCCAACTTTTCATTTTTCTGGATATACCTAT
GTTAAAAAC
Done.