Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02593.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 984

Length: 1641
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28


Found at i:60 original size:42 final size:42

Alignment explanation


    Indices: 1--83  Score: 166
    Period size: 42  Copynumber: 2.0  Consensus size: 42

                                                      
          1 GCAAAACCAAAAACCAAAACAAACAAAACCCAAAATCTTACC
          1 GCAAAACCAAAAACCAAAACAAACAAAACCCAAAATCTTACC

                                                     
         43 GCAAAACCAAAAACCAAAACAAACAAAACCCAAAATCTTAC
          1 GCAAAACCAAAAACCAAAACAAACAAAACCCAAAATCTTAC

         84 GTTGTAACTT


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   41  1.00

ACGTcount: A:0.60, C:0.30, G:0.02, T:0.07


Consensus pattern (42 bp):   
GCAAAACCAAAAACCAAAACAAACAAAACCCAAAATCTTACC
Done.