Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02600.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3801
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30


Found at i:206 original size:7 final size:7

Alignment explanation


    Indices: 196--224  Score: 58
    Period size: 7  Copynumber: 4.1  Consensus size: 7

        186 CATTCGATCA

                   
        196 TATATTC
          1 TATATTC

                   
        203 TATATTC
          1 TATATTC

                   
        210 TATATTC
          1 TATATTC

                   
        217 TATATTC
          1 TATATTC

             
        224 T
          1 T

        225 TAACTAAACT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.28, C:0.14, G:0.00, T:0.59


Consensus pattern (7 bp):   
TATATTC

Done.