Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02614.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2634
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:2028 original size:13 final size:13

Alignment explanation


    Indices: 2010--2034  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2000 ACTAATACAA

                         
       2010 AAGAGAGAGAGAT
          1 AAGAGAGAGAGAT

                        
       2023 AAGAGAGAGAGA
          1 AAGAGAGAGAGA

       2035 GAGAGACTTG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.56, C:0.00, G:0.40, T:0.04


Consensus pattern (13 bp):   
AAGAGAGAGAGAT
Done.