Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00038.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5143
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34


Found at i:3917 original size:25 final size:25

Alignment explanation


    Indices: 3889--3957  Score: 93
    Period size: 25  Copynumber: 2.7  Consensus size: 25

       3879 TGGTAACACT

                       *             
       3889 ATCTATGCATGTAGCACCATTTAGG
          1 ATCTATGCATGCAGCACCATTTAGG

                            **       
       3914 ATCTATGCATGCAGCAGTATTTAGG
          1 ATCTATGCATGCAGCACCATTTAGG

                      *        
       3939 ATCTATGCATCCAGTCACC
          1 ATCTATGCATGCAG-CACC

       3958 TATACAAACA


Statistics
Matches: 37,  Mismatches: 6, Indels: 1
        0.84            0.14        0.02

Matches are distributed among these distances:
  25   35  0.95
  26    2  0.05

ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30


Consensus pattern (25 bp):   
ATCTATGCATGCAGCACCATTTAGG
Done.