Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00043.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1751
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28


Found at i:1025 original size:30 final size:30

Alignment explanation


    Indices: 960--1031  Score: 90
    Period size: 30  Copynumber: 2.4  Consensus size: 30

        950 AATAACTCCC

                    *               **    
        960 ACAGCAACTACAACTACAGCAACTGTGACA
          1 ACAGCAACAACAACTACAGCAACTACGACA

                       *                  
        990 ACAGCAACAACGACTACAGCAACTACGACA
          1 ACAGCAACAACAACTACAGCAACTACGACA

            *      *    
       1020 GCAGCAAGAACA
          1 ACAGCAACAACA

       1032 GCTGTGTCGT


Statistics
Matches: 35,  Mismatches: 7, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  30   35  1.00

ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08


Consensus pattern (30 bp):   
ACAGCAACAACAACTACAGCAACTACGACA

Found at i:1026 original size:15 final size:15

Alignment explanation


    Indices: 960--1018  Score: 73
    Period size: 15  Copynumber: 3.9  Consensus size: 15

        950 AATAACTCCC

                       *   
        960 ACAGCAACTACAACT
          1 ACAGCAACTACGACT

                     **   *
        975 ACAGCAACTGTGACA
          1 ACAGCAACTACGACT

                    *      
        990 ACAGCAACAACGACT
          1 ACAGCAACTACGACT

                          
       1005 ACAGCAACTACGAC
          1 ACAGCAACTACGAC

       1019 AGCAGCAAGA


Statistics
Matches: 35,  Mismatches: 9, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  15   35  1.00

ACGTcount: A:0.44, C:0.32, G:0.14, T:0.10


Consensus pattern (15 bp):   
ACAGCAACTACGACT
Done.