Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00054.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2968
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24


Found at i:2531 original size:192 final size:192

Alignment explanation


    Indices: 2204--2769  Score: 970
    Period size: 192  Copynumber: 2.9  Consensus size: 192

       2194 CGCCACAAGT

                                 *                                           
       2204 GGATGATCAGGGTAGTCTGGATCAAATTTTGGTTAAACACAAATCAAAATTAGAGAAAGAGAAGA
          1 GGATGATCAGGGTAGTCTGGACCAAATTTTGGTTAAACACAAATCAAAATTAGAGAAAGAGAAGA

              * * *          *    *     *        *                           
       2269 TGACAAGTTCTGAGCAAGCAAGCGAGCAAATTAGATTATCTGTATCTCGTAGAGAAGCAAGGGAG
         66 TGGCTACTTCTGAGCAACCAAGTGAGCAGATTAGATTCTCTGTATCTCGTAGAGAAGCAAGGGAG

                                               *                          
       2334 AGAGAGTTGCAAGAAGCATGGGGCGGCTTAAGCTTGGGAAACTCCATTAAGCAACAGGTGGC
        131 AGAGAGTTGCAAGAAGCATGGGGCGGCTTAAGCTTAGGAAACTCCATTAAGCAACAGGTGGC

                                          *                       *          
       2396 GGATGATCAGGGTAGTCTGGACCAAATTTTAGTTAAACACAAATCAAAATTAGAAAAAGAGAAGA
          1 GGATGATCAGGGTAGTCTGGACCAAATTTTGGTTAAACACAAATCAAAATTAGAGAAAGAGAAGA

                                                                 *           
       2461 TGGCTACTTCTGAGCAACCAAGTGAGCAGATTAGATTCTCTGTATCTCGTAGACAAGCAAGGGAG
         66 TGGCTACTTCTGAGCAACCAAGTGAGCAGATTAGATTCTCTGTATCTCGTAGAGAAGCAAGGGAG

                                      *                                   
       2526 AGAGAGTTGCAAGAAGCATGGGGCGGTTTAAGCTTAGGAAACTCCATTAAGCAACAGGTGGC
        131 AGAGAGTTGCAAGAAGCATGGGGCGGCTTAAGCTTAGGAAACTCCATTAAGCAACAGGTGGC

                    *                                                        
       2588 GGATGATCGGGGTAGTCTGGACCAAATTTTGGTTAAACACAAATCAAAATTAGAGAAAGAGAAGA
          1 GGATGATCAGGGTAGTCTGGACCAAATTTTGGTTAAACACAAATCAAAATTAGAGAAAGAGAAGA

                                                     *                       
       2653 TGGCTACTTCTGAGCAACCAAGTGAGCAGATTAGATTCTCTCTATCTCGTAGAGAAGCAAGGGAG
         66 TGGCTACTTCTGAGCAACCAAGTGAGCAGATTAGATTCTCTGTATCTCGTAGAGAAGCAAGGGAG

                                   *   *  *                     
       2718 AGAGAGTTGCAAGAAGCATGGGGAGGCCTAGGCTTAGGAAACTCCATTAAGC
        131 AGAGAGTTGCAAGAAGCATGGGGCGGCTTAAGCTTAGGAAACTCCATTAAGC

       2770 CACATTTATC


Statistics
Matches: 352,  Mismatches: 22, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 192  352  1.00

ACGTcount: A:0.36, C:0.15, G:0.28, T:0.21


Consensus pattern (192 bp):   
GGATGATCAGGGTAGTCTGGACCAAATTTTGGTTAAACACAAATCAAAATTAGAGAAAGAGAAGA
TGGCTACTTCTGAGCAACCAAGTGAGCAGATTAGATTCTCTGTATCTCGTAGAGAAGCAAGGGAG
AGAGAGTTGCAAGAAGCATGGGGCGGCTTAAGCTTAGGAAACTCCATTAAGCAACAGGTGGC
Done.