Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00080.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 885

Length: 1475
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33


Found at i:1001 original size:61 final size:61

Alignment explanation


    Indices: 903--1083  Score: 247
    Period size: 62  Copynumber: 3.0  Consensus size: 61

        893 CTGCCCTACC

                                     *       *              *        *    
        903 GCTATTA-TTTTTTTAGAGCAACTGTTTTGCTGTCTCTTCACGTCTCTTTGCAACCCTTGCT
          1 GCTATTATTTTTTTTAG-GCAACTGCTTTGCTGCCTCTTCACGTCTCTCTGCAACCCCTGCT

                           *                           *               * 
        964 GCTATTATTTTTTTTTGGCAACTGCTTTGCTGCCTCTTCACGTATCTCTGCAACCCCTGTT
          1 GCTATTATTTTTTTTAGGCAACTGCTTTGCTGCCTCTTCACGTCTCTCTGCAACCCCTGCT

                            * *     *                                  
       1025 GCTATTATATTTTTTTCGACAACTACTTTGCTGCCTCTTCACGTCTCTCTGCAACCCCT
          1 GCTATTAT-TTTTTTTAGGCAACTGCTTTGCTGCCTCTTCACGTCTCTCTGCAACCCCT

       1084 ACTGATTTGC


Statistics
Matches: 107,  Mismatches: 11, Indels: 3
        0.88            0.09        0.02

Matches are distributed among these distances:
  61   53  0.50
  62   54  0.50

ACGTcount: A:0.15, C:0.28, G:0.13, T:0.44


Consensus pattern (61 bp):   
GCTATTATTTTTTTTAGGCAACTGCTTTGCTGCCTCTTCACGTCTCTCTGCAACCCCTGCT

Done.