Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00111.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2154
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:2082 original size:13 final size:13

Alignment explanation


    Indices: 2064--2097  Score: 50
    Period size: 13  Copynumber: 2.6  Consensus size: 13

       2054 TAGATTTCAT

                     *   
       2064 TGTTAAACTTGAA
          1 TGTTAAACTGGAA

                  *      
       2077 TGTTAATCTGGAA
          1 TGTTAAACTGGAA

                    
       2090 TGTTAAAC
          1 TGTTAAAC

       2098 AAACCATTTC


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38


Consensus pattern (13 bp):   
TGTTAAACTGGAA
Done.