Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00120.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1802
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26


Found at i:1248 original size:36 final size:36

Alignment explanation


    Indices: 1203--1282  Score: 97
    Period size: 36  Copynumber: 2.2  Consensus size: 36

       1193 GGACCAAGTT

                *                    *          
       1203 CTGGTTATGGACAAAATTTCGGACAGGGGGCAAATC
          1 CTGGCTATGGACAAAATTTCGGACAAGGGGCAAATC

                      *  *     *  *             
       1239 CTGGCTATGGGCAGAATTTTGGGCAAGGGGCAAATC
          1 CTGGCTATGGACAAAATTTCGGACAAGGGGCAAATC

               *    
       1275 CTGACTAT
          1 CTGGCTAT

       1283 ACCCAGAATC


Statistics
Matches: 37,  Mismatches: 7, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24


Consensus pattern (36 bp):   
CTGGCTATGGACAAAATTTCGGACAAGGGGCAAATC

Found at i:1290 original size:36 final size:36

Alignment explanation


    Indices: 1229--1302  Score: 94
    Period size: 36  Copynumber: 2.1  Consensus size: 36

       1219 TTTCGGACAG

                         *    ***      **       
       1229 GGGGCAAATCCTGGCTATGGGCAGAATTTTGGGCAA
          1 GGGGCAAATCCTGACTATACCCAGAATCCTGGGCAA

                                                
       1265 GGGGCAAATCCTGACTATACCCAGAATCCTGGGCAA
          1 GGGGCAAATCCTGACTATACCCAGAATCCTGGGCAA

              
       1301 GG
          1 GG

       1303 CTACGACCGA


Statistics
Matches: 32,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  36   32  1.00

ACGTcount: A:0.27, C:0.22, G:0.32, T:0.19


Consensus pattern (36 bp):   
GGGGCAAATCCTGACTATACCCAGAATCCTGGGCAA
Done.