Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00123.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1751
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29


Found at i:1266 original size:12 final size:11

Alignment explanation


    Indices: 1249--1296  Score: 51
    Period size: 12  Copynumber: 4.1  Consensus size: 11

       1239 GGATGCAAAG

                        
       1249 GAAGAAGATGCA
          1 GAAGAAGATG-A

                    *   
       1261 GAAGAAGAAGTA
          1 GAAGAAGATG-A

                    *  
       1273 GAAGAAGACGA
          1 GAAGAAGATGA

                        
       1284 CGAAGAAGATGA
          1 -GAAGAAGATGA

             
       1296 G
          1 G

       1297 TACGAGAAAA


Statistics
Matches: 31,  Mismatches: 4, Indels: 3
        0.82            0.11        0.08

Matches are distributed among these distances:
  11    2  0.06
  12   29  0.94

ACGTcount: A:0.52, C:0.06, G:0.35, T:0.06


Consensus pattern (11 bp):   
GAAGAAGATGA
Done.