Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00136.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 547

Length: 912
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29


Found at i:38 original size:2 final size:2

Alignment explanation


    Indices: 31--73  Score: 68
    Period size: 2  Copynumber: 21.5  Consensus size: 2

         21 TGATTATCAA

                                     *                *                   
         31 CT CT CT CT CT CT CT CT CG CT CT CT CT CT AT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

             
         73 C
          1 C

         74 ATGGAAGGAG


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   2   37  1.00

ACGTcount: A:0.02, C:0.49, G:0.02, T:0.47


Consensus pattern (2 bp):   
CT

Found at i:505 original size:17 final size:18

Alignment explanation


    Indices: 470--507  Score: 53
    Period size: 17  Copynumber: 2.2  Consensus size: 18

        460 CCCGGCGCAG

                              
        470 AGGAACAAAACACGAACA
          1 AGGAACAAAACACGAACA

                               
        488 AGGAAGCAAAA-A-GAACA
          1 AGGAA-CAAAACACGAACA

               
        505 AGG
          1 AGG

        508 CTAACAGTGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  17    8  0.42
  18    6  0.32
  19    5  0.26

ACGTcount: A:0.61, C:0.16, G:0.24, T:0.00


Consensus pattern (18 bp):   
AGGAACAAAACACGAACA
Done.