Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00140.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2198
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34


Found at i:1348 original size:15 final size:14

Alignment explanation


    Indices: 1328--1357  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       1318 AAATCTGGTG

                           
       1328 GTGTTGTTGTGTAGA
          1 GTGTTGTTG-GTAGA

                          
       1343 GTGTTGTTGGTAGA
          1 GTGTTGTTGGTAGA

             
       1357 G
          1 G

       1358 CTTTTCCTTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.13, C:0.00, G:0.43, T:0.43


Consensus pattern (14 bp):   
GTGTTGTTGGTAGA

Found at i:1538 original size:21 final size:21

Alignment explanation


    Indices: 1514--1556  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1504 TGGTTTACCA

                                 
       1514 TCTTGTTCTGTAAATTTCATT
          1 TCTTGTTCTGTAAATTTCATT

                                 
       1535 TCTTGTTCTGTAAATTTCATT
          1 TCTTGTTCTGTAAATTTCATT

             
       1556 T
          1 T

       1557 GAAGTCCTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.19, C:0.14, G:0.09, T:0.58


Consensus pattern (21 bp):   
TCTTGTTCTGTAAATTTCATT
Done.