Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00148.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1871
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33


Found at i:69 original size:6 final size:6

Alignment explanation


    Indices: 59--106  Score: 87
    Period size: 6  Copynumber: 8.0  Consensus size: 6

         49 GTATTCGATT

                 *                                                 
         59 CTCTCT CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC
          1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC

        107 GGTGTTGTTA


Statistics
Matches: 41,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   41  1.00

ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35


Consensus pattern (6 bp):   
CTCTCC

Done.