Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00154.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4174
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.34


Found at i:2314 original size:2 final size:2

Alignment explanation


    Indices: 2307--2342  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       2297 AAGAAATACC

                            *                                    
       2307 AG AG AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

       2343 TTTATATGCT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00


Consensus pattern (2 bp):   
AG

Done.