Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00154.F12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3408
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33


Found at i:2149 original size:2 final size:2

Alignment explanation


    Indices: 2142--2177  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       2132 AAGAAATACC

                            *                                    
       2142 AG AG AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

       2178 TTTATATGCT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00


Consensus pattern (2 bp):   
AG

Done.