Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00177.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1818
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:1690 original size:10 final size:10

Alignment explanation


    Indices: 1675--1734  Score: 79
    Period size: 10  Copynumber: 6.0  Consensus size: 10

       1665 AAATTTTAGG

                      
       1675 ATTTAT-TTT
          1 ATTTATCTTT

                       
       1684 CATTTATCTTT
          1 -ATTTATCTTT

                      
       1695 ATTTATCTTT
          1 ATTTATCTTT

             *        
       1705 AATTATCTTT
          1 ATTTATCTTT

                       
       1715 ATTTAT-TTGT
          1 ATTTATCTT-T

                      
       1725 ATTTATCTTT
          1 ATTTATCTTT

       1735 TAGAATTTCA


Statistics
Matches: 45,  Mismatches: 2, Indels: 6
        0.85            0.04        0.11

Matches are distributed among these distances:
   9    2  0.04
  10   38  0.84
  11    5  0.11

ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68


Consensus pattern (10 bp):   
ATTTATCTTT

Done.