Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00189.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 599

Length: 999
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39


Found at i:258 original size:30 final size:28

Alignment explanation


    Indices: 224--286  Score: 74
    Period size: 30  Copynumber: 2.2  Consensus size: 28

        214 TATTAAAATA

                           *               
        224 AAGGGCTT-TTTTGAGTAAAAATTATAAGTT
          1 AAGGGCTTATTTT-ACTAAAAA--ATAAGTT

                                    *   
        254 AAGGGCTTATTTTACTAAAAAATAGGTT
          1 AAGGGCTTATTTTACTAAAAAATAAGTT

                 
        282 AAGGG
          1 AAGGG

        287 TTTGTTTAAA


Statistics
Matches: 30,  Mismatches: 2, Indels: 4
        0.83            0.06        0.11

Matches are distributed among these distances:
  28   11  0.37
  30   15  0.50
  31    4  0.13

ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35


Consensus pattern (28 bp):   
AAGGGCTTATTTTACTAAAAAATAAGTT
Done.