Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00190.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1111
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32


Found at i:166 original size:38 final size:38

Alignment explanation


    Indices: 139--211  Score: 103
    Period size: 38  Copynumber: 1.9  Consensus size: 38

        129 AAATTTTAGG

                                                  
        139 CATTTCTTCTCCATGTCTTTCGGTCTGAAAATCTATGA
          1 CATTTCTTCTCCATGTCTTTCGGTCTGAAAATCTATGA

             *          *              *        
        177 CGTTTCTTCTCCTTGTCTTTCAGG-CTTAAAATCTA
          1 CATTTCTTCTCCATGTCTTTC-GGTCTGAAAATCTA

        212 AGGCGCTGCT


Statistics
Matches: 31,  Mismatches: 3, Indels: 2
        0.86            0.08        0.06

Matches are distributed among these distances:
  38   29  0.94
  39    2  0.06

ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44


Consensus pattern (38 bp):   
CATTTCTTCTCCATGTCTTTCGGTCTGAAAATCTATGA

Found at i:224 original size:38 final size:38

Alignment explanation


    Indices: 144--228  Score: 100
    Period size: 38  Copynumber: 2.2  Consensus size: 38

        134 TTAGGCATTT

                                          *    * *
        144 CTTCTCCATGTCTTTCGGTCTGAAAATCTATGACGTTT
          1 CTTCTCCATGTCTTTCGGTCTGAAAATCTAAGACGCTG

                   *              *          *     
        182 CTTCTCCTTGTCTTTCAGG-CTTAAAATCTAAGGCGCTG
          1 CTTCTCCATGTCTTTC-GGTCTGAAAATCTAAGACGCTG

                     
        220 CTTCTCCAT
          1 CTTCTCCAT

        229 TGCACACCAA


Statistics
Matches: 39,  Mismatches: 7, Indels: 2
        0.81            0.15        0.04

Matches are distributed among these distances:
  38   37  0.95
  39    2  0.05

ACGTcount: A:0.18, C:0.27, G:0.15, T:0.40


Consensus pattern (38 bp):   
CTTCTCCATGTCTTTCGGTCTGAAAATCTAAGACGCTG
Done.