Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00202.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5533
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:66 original size:24 final size:25

Alignment explanation


    Indices: 25--81  Score: 62
    Period size: 24  Copynumber: 2.3  Consensus size: 25

         15 TTTCTTTTCC

                     **  *    *      
         25 TTTTTTAGATTAGGTTTTCCTTTT-
          1 TTTTTTAGAAAAGATTTTACTTTTG

                                     
         49 TTTTTTAGAAAAGATTTTACTTTTG
          1 TTTTTTAGAAAAGATTTTACTTTTG

                    
         74 TTGTTTTA
          1 TT-TTTTA

         82 TTTCTTTTTC


Statistics
Matches: 27,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  24   20  0.74
  25    2  0.07
  26    5  0.19

ACGTcount: A:0.19, C:0.05, G:0.12, T:0.63


Consensus pattern (25 bp):   
TTTTTTAGAAAAGATTTTACTTTTG
Done.