Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g00211.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703
Length: 1173
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Found at i:818 original size:243 final size:243
Alignment explanation
Indices: 390--881 Score: 894
Period size: 243 Copynumber: 2.0 Consensus size: 243
380 ATCTTCTTGT
*
390 CATTCCAGTGGATGGAGAAAATGGAATGAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
1 CATTCCAGTGGATGGAGAAAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
* * * *
455 CCCAGCAGCAATTTCTTCAGGAAGATTCCACTGAAATGTTTTGGGGAGATCCTTTCCGACGCACC
66 CCCAGCAGCAATTTCTTCAGGAAGATTCCAATAAAATGTTTCGGGGAGATCCTTTCCGACCCACC
*
520 TACAAGGAGAATGATAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
131 TACAAGGAGAATGAAAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
585 AGAGATGAATTCATCAACAGCGGATATCTTCAGGGTATGGGATTTGGA
196 AGAGATGAATTCATCAACAGCGGATATCTTCAGGGTATGGGATTTGGA
*
633 CATTCCAGTGGATGGAGACAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
1 CATTCCAGTGGATGGAGAAAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
* *
698 CTCAGCTGCAATTTCTTCAGGAAGATTCCAATAAAATGTTTCGGGGAGATCCTTTCCGACCCACC
66 CCCAGCAGCAATTTCTTCAGGAAGATTCCAATAAAATGTTTCGGGGAGATCCTTTCCGACCCACC
763 TACAAGGAGAATGAAAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
131 TACAAGGAGAATGAAAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
*
828 AGAGATGAATTCATCAACAGTGGATATCTTCAGGGTATGGGATTTGGA
196 AGAGATGAATTCATCAACAGCGGATATCTTCAGGGTATGGGATTTGGA
876 CATTCC
1 CATTCC
882 GGATGAGGAA
Statistics
Matches: 239, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
243 239 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (243 bp):
CATTCCAGTGGATGGAGAAAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
CCCAGCAGCAATTTCTTCAGGAAGATTCCAATAAAATGTTTCGGGGAGATCCTTTCCGACCCACC
TACAAGGAGAATGAAAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
AGAGATGAATTCATCAACAGCGGATATCTTCAGGGTATGGGATTTGGA
Done.