Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g00211.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 748
Length: 1248
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Found at i:893 original size:243 final size:243
Alignment explanation
Indices: 465--956 Score: 894
Period size: 243 Copynumber: 2.0 Consensus size: 243
455 ATCTTCTTGT
*
465 CATTCCAGTGGATGGAGAAAATGGAATGAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
1 CATTCCAGTGGATGGAGAAAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
* * * *
530 CCCAGCAGCAATTTCTTCAGGAAGATTCCACTGAAATGTTTTGGGGAGATCCTTTCCGACGCACC
66 CCCAGCAGCAATTTCTTCAGGAAGATTCCAATAAAATGTTTCGGGGAGATCCTTTCCGACCCACC
*
595 TACAAGGAGAATGATAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
131 TACAAGGAGAATGAAAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
660 AGAGATGAATTCATCAACAGCGGATATCTTCAGGGTATGGGATTTGGA
196 AGAGATGAATTCATCAACAGCGGATATCTTCAGGGTATGGGATTTGGA
*
708 CATTCCAGTGGATGGAGACAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
1 CATTCCAGTGGATGGAGAAAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
* *
773 CTCAGCTGCAATTTCTTCAGGAAGATTCCAATAAAATGTTTCGGGGAGATCCTTTCCGACCCACC
66 CCCAGCAGCAATTTCTTCAGGAAGATTCCAATAAAATGTTTCGGGGAGATCCTTTCCGACCCACC
838 TACAAGGAGAATGAAAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
131 TACAAGGAGAATGAAAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
*
903 AGAGATGAATTCATCAACAGTGGATATCTTCAGGGTATGGGATTTGGA
196 AGAGATGAATTCATCAACAGCGGATATCTTCAGGGTATGGGATTTGGA
951 CATTCC
1 CATTCC
957 GGATGAGGAA
Statistics
Matches: 239, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
243 239 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (243 bp):
CATTCCAGTGGATGGAGAAAATGGAATAAACACCAACAACATTCCTATCAAAAAGAGGACTGGTA
CCCAGCAGCAATTTCTTCAGGAAGATTCCAATAAAATGTTTCGGGGAGATCCTTTCCGACCCACC
TACAAGGAGAATGAAAGAAAGGATAGTGCTGTTGATTCAGGAGTTAAATCAAGCTTATCTGCAGA
AGAGATGAATTCATCAACAGCGGATATCTTCAGGGTATGGGATTTGGA
Done.